| 22 Nov 12 | M. Sidibe Mamady Sidibe |  Stoke CitySTK | → |  Sheffield WednesdaySHW | Loan |
| 22 Nov 12 | M. Sidibe Mamady Sidibe | Stoke CitySTK | → | Sheffield WednesdaySHW | Loan |
| 12 Oct 12 | J. Pennant Jermaine Pennant | Stoke CitySTK | → |  Wolverhampton WanderersWOL | Loan |
| 12 Oct 12 | J. Pennant Jermaine Pennant | Stoke CitySTK | → | Wolverhampton WanderersWOL | Loan |
| 21 Sept 12 | D. Higginbotham Danny Higginbotham | Stoke CitySTK | → |  Ipswich TownIPS | Loan |
| 21 Sept 12 | D. Higginbotham Danny Higginbotham | Stoke CitySTK | → | Ipswich TownIPS | Loan |
| 13 Sept 12 | M. Tonge Michael Tonge | Stoke CitySTK | → |  Leeds UnitedLEE | Loan |
| 13 Sept 12 | M. Tonge Michael Tonge | Stoke CitySTK | → | Leeds UnitedLEE | Loan |
| 31 Aug 12 | S. N'Zonzi Steven N'Zonzi |  Blackburn RoversBLK | → | Stoke CitySTK | Undisclosed |
| 31 Aug 12 | S. N'Zonzi Steven N'Zonzi | Blackburn RoversBLK | → | Stoke CitySTK | Undisclosed |
| 08 Aug 12 | M. Kightly Michael Kightly | Wolverhampton WanderersWOL | → | Stoke CitySTK | Undisclosed |
| 08 Aug 12 | M. Kightly Michael Kightly | Wolverhampton WanderersWOL | → | Stoke CitySTK | Undisclosed |
| 25 Jul 12 | D. Collins Danny Collins | Stoke CitySTK | → |  Nottingham ForestFOR | Undisclosed |
| 25 Jul 12 | D. Collins Danny Collins | Stoke CitySTK | → | Nottingham ForestFOR | Undisclosed |
| 06 Jul 12 | J. Woodgate Jonathan Woodgate | Stoke CitySTK | → |  MiddlesbroughMID | Free |
| 06 Jul 12 | J. Woodgate Jonathan Woodgate | Stoke CitySTK | → | MiddlesbroughMID | Free |
| 16 Mar 12 | D. Arismendi Diego Arismendi | Stoke CitySTK | → |  Huddersfield TownHUD | Loan |
| 31 Jan 12 | D. Higginbotham Danny Higginbotham | Stoke CitySTK | → | Nottingham ForestFOR | Loan |
| 31 Jan 12 | D. Higginbotham Danny Higginbotham | Stoke CitySTK | → | Nottingham ForestFOR | Loan |
| 31 Jan 12 | B. Marshall Ben Marshall | Stoke CitySTK | → |  Leicester CityLEI | Undisclosed |
| 31 Jan 12 | B. Marshall Ben Marshall | Stoke CitySTK | → | Leicester CityLEI | Undisclosed |
| 24 Jan 12 | M. Tonge Michael Tonge | Stoke CitySTK | → |  BarnsleyBAR | Loan |
| 24 Jan 12 | M. Tonge Michael Tonge | Stoke CitySTK | → | BarnsleyBAR | Loan |
| 03 Jan 12 | D. Pugh Danny Pugh | Stoke CitySTK | → | Leeds UnitedLEE | Undisclosed |
| 03 Jan 12 | D. Pugh Danny Pugh | Stoke CitySTK | → | Leeds UnitedLEE | Undisclosed |