| 01 Sept 23 | P. Wanner Paul Wanner |  Bayern MunichMUN | → |  SV 07 ElversbergELV | Loan |
| 01 Sept 23 | A. Ibrahimovic Arijon Ibrahimovic | Bayern MunichMUN | → |  FrosinoneFRO | Loan |
| 01 Sept 23 | R. Gravenberch Ryan Gravenberch | Bayern MunichMUN | → |  LiverpoolLIV | Undisclosed |
| 30 Aug 23 | B. Pavard Benjamin Pavard | Bayern MunichMUN | → |  InternazionaleINT | Undisclosed |
| 30 Aug 23 | G. Vidovic Gabriel Vidovic | Bayern MunichMUN | → | DZXDinamo ZagrebDinamo Zagreb | Loan |
| 25 Aug 23 | D. Peretz Daniel Peretz |  Maccabi Tel-AvivMTA | → | Bayern MunichMUN | Undisclosed |
| 20 Aug 23 | J. Stanisic Josip Stanisic | Bayern MunichMUN | → |  Bayer LeverkusenB04 | Loan |
| 12 Aug 23 | H. Kane Harry Kane |  Tottenham HotspurTOT | → | Bayern MunichMUN | Undisclosed |
| 10 Aug 23 | M. Tillman Malik Tillman | Bayern MunichMUN | → |  PSV EindhovenPSV | Loan |
| 07 Aug 23 | Y. Sommer Yann Sommer | Bayern MunichMUN | → | InternazionaleINT | Undisclosed |
| 01 Aug 23 | S. Mané Sadio Mané | Bayern MunichMUN | → | ANXAl NassrAl Nassr | Undisclosed |
| 25 Jul 23 | A. Nübel Alexander Nübel | Bayern MunichMUN | → |  VfB StuttgartVFB | Loan |
| 24 Jul 23 | M. Sabitzer Marcel Sabitzer | Bayern MunichMUN | → |  Borussia DortmundDOR | Undisclosed |
| 18 Jul 23 | K. Min-Jae Kim Min-Jae |  NapoliNAP | → | Bayern MunichMUN | Undisclosed |
| 09 Jul 23 | L. Hernández Lucas Hernández | Bayern MunichMUN | → |  Paris Saint-GermainPSG | Undisclosed |
| 07 Jul 23 | D. Blind Daley Blind | Bayern MunichMUN | → |  GironaGIR | Free |
| 01 Jul 23 | R. Guerreiro Raphaël Guerreiro | Borussia DortmundDOR | → | Bayern MunichMUN | Free |
| 01 Jul 23 | K. Laimer Konrad Laimer |  RB LeipzigRBL | → | Bayern MunichMUN | Free |
| 31 Jan 23 | M. Sabitzer Marcel Sabitzer | Bayern MunichMUN | → |  Manchester UnitedMAN | Loan |
| 31 Jan 23 | J. Cancelo João Cancelo |  Manchester CityMNC | → | Bayern MunichMUN | Loan |
| 19 Jan 23 | Y. Sommer Yann Sommer |  Borussia MonchengladbachBMG | → | Bayern MunichMUN | Undisclosed |
| 05 Jan 23 | D. Blind Daley Blind |  Ajax AmsterdamAJA | → | Bayern MunichMUN | Free |