| 13 Dec 13 | C. Mahoney Connor Mahoney |  Accrington StanleyACCR | → |  Blackburn RoversBLK | Undisclosed |
| 28 Nov 13 | J. Morris Josh Morris | Blackburn RoversBLK | → |  Carlisle UnitedCAR | Loan |
| 28 Nov 13 | R. Edwards Ryan Edwards | Blackburn RoversBLK | → |  Tranmere RoversTRN | Loan |
| 26 Nov 13 | R. Gestede Rudy Gestede |  Cardiff CityCAR | → | Blackburn RoversBLK | Loan |
| 26 Nov 13 | R. Gestede Rudy Gestede | Cardiff CityCAR | → | Blackburn RoversBLK | Loan |
| 01 Oct 13 | A. O'Connor Anthony O'Connor | Blackburn RoversBLK | → |  Torquay UnitedTQU | Loan |
| 02 Sept 13 | B. Orr Bradley Orr | Blackburn RoversBLK | → |  BlackpoolBLP | Loan |
| 30 Aug 13 | G. Givet Gaël Givet | Blackburn RoversBLK | → |  ArlesARL | Undisclosed |
| 29 Aug 13 | M. Pedersen Morten Gamst Pedersen | Blackburn RoversBLK | → |  KarabuksporKarabukspor | Free |
| 18 Aug 13 | A. Tumwa Aaron Tumwa |  WatfordWAT | → | Blackburn RoversBLK | Free |
| 05 Aug 13 | Y. Songo'o Yann Songo'o | XXX | → | Blackburn RoversBLK | Free |
| 02 Aug 13 | C. Evans Corry Evans |  Hull CityHUL | → | Blackburn RoversBLK | Undisclosed |
| 02 Aug 13 | C. Evans Corry Evans | Hull CityHUL | → | Blackburn RoversBLK | Undisclosed |
| 01 Aug 13 | T. Cairney Tom Cairney | Hull CityHUL | → | Blackburn RoversBLK | Loan |
| 01 Aug 13 | T. Spurr Thomas Spurr | XXX | → | Blackburn RoversBLK | Free |
| 01 Aug 13 | T. Cairney Tom Cairney | Hull CityHUL | → | Blackburn RoversBLK | Loan |
| 23 Jul 13 | R. Edwards Ryan Edwards | Blackburn RoversBLK | → |  ChesterfieldCHES | Loan |
| 22 Jul 13 | J. O'Connell Jack O'Connell | Blackburn RoversBLK | → |  RochdaleROCH | Loan |
| 19 Jul 13 | E. Junior Edinho Junior | Blackburn RoversBLK | → | WXXWhitehawkWhitehawk | Loan |
| 18 Jul 13 | A. Forrester Anton Forrester | Blackburn RoversBLK | → |  BuryBURY | Loan |
| 10 Jul 13 | M. Olsson Martin Olsson | Blackburn RoversBLK | → |  Norwich CityNOR | Undisclosed |
| 10 Jul 13 | M. Olsson Martin Olsson | Blackburn RoversBLK | → | Norwich CityNOR | Undisclosed |
| 09 Jul 13 | A. Marrow Alex Marrow |  Crystal PalaceCRY | → | Blackburn RoversBLK | Undisclosed |
| 09 Jul 13 | A. Marrow Alex Marrow | Crystal PalaceCRY | → | Blackburn RoversBLK | Undisclosed |
| 08 Jul 13 | M. Kilgallon Matthew Kilgallon |  SunderlandSUN | → | Blackburn RoversBLK | Free |
| 08 Jul 13 | M. Kilgallon Matthew Kilgallon | SunderlandSUN | → | Blackburn RoversBLK | Free |
| 04 Jul 13 | D. Campbell DJ Campbell |  Queens Park RangersQPR | → | Blackburn RoversBLK | Free |
| 02 Jul 13 | D. Goodwillie David Goodwillie | Blackburn RoversBLK | → |  Dundee UnitedDUN | Loan |
| 02 Jul 13 | D. Goodwillie David Goodwillie | Blackburn RoversBLK | → | Dundee UnitedDUN | Loan |
| 02 Jul 13 | Dervan Green |  Burton AlbionBRT | → | Blackburn RoversBLK | Undisclosed |
| 01 Jul 13 | C. Taylor Chris Taylor |  MillwallMIL | → | Blackburn RoversBLK | Free |
| 01 Jul 13 | J. Maclaren Jamie Maclaren | Blackburn RoversBLK | → |  Perth GloryPER | Undisclosed |
| 01 Jul 13 | T. Kane Todd Kane |  ChelseaCHE | → | Blackburn RoversBLK | Loan |
| 01 Jul 13 | A. Judge Alan Judge |  Notts CountyNOTT | → | Blackburn RoversBLK | Free |
| 01 Jul 13 | J. Maclaren Jamie Maclaren | Blackburn RoversBLK | → | Perth GloryPER | Undisclosed |
| 01 Jul 13 | T. Kane Todd Kane | ChelseaCHE | → | Blackburn RoversBLK | Loan |
| 25 Jun 13 | T. Kane Todd Kane | ChelseaCHE | → | Blackburn RoversBLK | Loan |
| 25 Jun 13 | T. Kane Todd Kane | ChelseaCHE | → | Blackburn RoversBLK | Loan |
| 28 May 13 | S. Eastwood Simon Eastwood |  PortsmouthPOR | → | Blackburn RoversBLK | Undisclosed |
| 15 Mar 13 | T. Kane Todd Kane | ChelseaCHE | → | Blackburn RoversBLK | Loan |
| 15 Mar 13 | T. Kane Todd Kane | ChelseaCHE | → | Blackburn RoversBLK | Loan |
| 02 Mar 13 | D. Jones David Jones |  Wigan AthleticWGA | → | Blackburn RoversBLK | Loan |
| 02 Mar 13 | D. Jones David Jones | Wigan AthleticWGA | → | Blackburn RoversBLK | Loan |
| 01 Mar 13 | C. Stewart Cameron Stewart | Hull CityHUL | → | Blackburn RoversBLK | Loan |
| 21 Feb 13 | R. Edwards Ryan Edwards | Blackburn RoversBLK | → |  Fleetwood TownFLE | Loan |
| 15 Feb 13 | K. Rekik Karim Rekik |  Manchester CityMNC | → | Blackburn RoversBLK | Loan |
| 15 Feb 13 | D. Bentley David Bentley |  Tottenham HotspurTOT | → | Blackburn RoversBLK | Loan |
| 15 Feb 13 | D. Bentley David Bentley | Tottenham HotspurTOT | → | Blackburn RoversBLK | Loan |
| 15 Feb 13 | K. Rekik Karim Rekik | Manchester CityMNC | → | Blackburn RoversBLK | Loan |
| 13 Feb 13 | E. Junior Edinho Junior | Blackburn RoversBLK | → | SLXShillong LajongShillong Lajong | Loan |
| 11 Feb 13 | P. Jorge Paulo Jorge | Blackburn RoversBLK | → | BSZBeroe Stara ZagoraBeroe Stara Zagora | Loan |
| 08 Feb 13 | D. Campbell DJ Campbell | Queens Park RangersQPR | → | Blackburn RoversBLK | Loan |
| 08 Feb 13 | L. Williamson Lee Williamson | XXX | → | Blackburn RoversBLK | Free |
| 08 Feb 13 | D. Campbell DJ Campbell | Queens Park RangersQPR | → | Blackburn RoversBLK | Loan |
| 31 Jan 13 | R. Rochina Rubén Rochina | Blackburn RoversBLK | → |  Real ZaragozaZAR | Loan |
| 31 Jan 13 | J. Slew Jordan Slew | Blackburn RoversBLK | → |  Rotherham UnitedROT | Loan |
| 31 Jan 13 | R. Rochina Rubén Rochina | Blackburn RoversBLK | → | Real ZaragozaZAR | Loan |
| 30 Jan 13 | C. Dilo Christopher Dilo | Blackburn RoversBLK | → | HXXHydeHyde | Loan |
| 30 Jan 13 | Anton Forrester |  EvertonEVE | → | Blackburn RoversBLK | Free |
| 30 Jan 13 | O. Osawe Osayamen Osawe | Blackburn RoversBLK | → | HXXHydeHyde | Loan |
| 30 Jan 13 | Anton Forrester | EvertonEVE | → | Blackburn RoversBLK | Free |
| 24 Jan 13 | J. O'Connell Jack O'Connell | Blackburn RoversBLK | → |  York CityYORK | Loan |
| 24 Jan 13 | M. Formica Mauro Formica | Blackburn RoversBLK | → |  PalermoPAL | Loan |
| 24 Jan 13 | M. Formica Mauro Formica | Blackburn RoversBLK | → | PalermoPAL | Loan |
| 09 Jan 13 | T. Kane Todd Kane | ChelseaCHE | → | Blackburn RoversBLK | Loan |
| 09 Jan 13 | T. Kane Todd Kane | ChelseaCHE | → | Blackburn RoversBLK | Loan |
| 08 Jan 13 | B. de Paula Ribeiro Ingrácia Bruno Ribeiro | Blackburn RoversBLK | → |  LinenseLIN | Loan |
| 08 Jan 13 | B. de Paula Ribeiro Ingrácia Bruno Ribeiro | Blackburn RoversBLK | → | LinenseLIN | Loan |
| 07 Jan 13 | M. Anderson Miles Anderson | Blackburn RoversBLK | → |  Exeter CityEXE | Free |
| 02 Jan 13 | J. King Joshua King |  Manchester UnitedMAN | → | Blackburn RoversBLK | Undisclosed |
| 02 Jan 13 | J. King Joshua King | Manchester UnitedMAN | → | Blackburn RoversBLK | Undisclosed |