| 20 Dec 16 | V. Janjetovic Vedran Janjetovic |  Sydney FCSYD | → |  Western Sydney WanderersWSW | Free |
| 18 Oct 16 | M. Beister Maximilian Beister |  MainzMAIN | → |  Melbourne VictoryMVC | Loan |
| 18 Oct 16 | M. Beister Maximilian Beister | MainzMAIN | → | Melbourne VictoryMVC | Loan |
| 21 Sept 16 | James Holland | DXXDuisburgDuisburg | → |  Adelaide UnitedADE | Free |
| 19 Sept 16 | N. Colazo Nicolás Colazo |  Boca JuniorsCABJ | → |  Melbourne City FCMCY | Loan |
| 19 Sept 16 | N. Colazo Nicolás Colazo | Boca JuniorsCABJ | → | Melbourne City FCMCY | Loan |
| 06 Sept 16 | N. Martínez Nicolás Martínez |  OlympiakosOLY | → | Western Sydney WanderersWSW | Loan |
| 01 Sept 16 | B. Holman Brett Holman | XXX | → |  Brisbane RoarBRR | Free |
| 01 Sept 16 | M. Jakobsen Michael Jakobsen |  Esbjerg FBESBJ | → | Melbourne City FCMCY | Undisclosed |
| 31 Aug 16 | B. Holman Brett Holman | ECXEmirates ClubEmirates Club | → | Brisbane RoarBRR | Free |
| 24 Aug 16 | K. Bulut Kerem Bulut |  IraklisIraklis | → | Western Sydney WanderersWSW | Undisclosed |
| 21 Aug 16 | Bobô |  GrêmioGRE | → | Sydney FCSYD | Free |
| 21 Aug 16 | Bobô | GrêmioGRE | → | Sydney FCSYD | Free |
| 17 Aug 16 | F. Piovaccari Federico Piovaccari | Western Sydney WanderersWSW | → |  CórdobaCOR | Free |
| 16 Aug 16 | A. Kokko Aleksandr Kokko | RXXRoPS RoPS | → |  Newcastle JetsNEW | Undisclosed |
| 11 Aug 16 | S. Jamieson Scott Jamieson | Western Sydney WanderersWSW | → |  IFKIFK | Undisclosed |
| 10 Aug 16 | T. Cahill Tim Cahill |  Zhejiang Professional FCZHE | → | Melbourne City FCMCY | Free |
| 09 Aug 16 | M. Rossi Marco Rossi |  PerugiaPER | → |  Wellington Phoenix FCWEL | Undisclosed |
| 31 Jul 16 | J. Troisi James Troisi |  Liaoning WhowinLIAO | → | Melbourne VictoryMVC | Free |
| 28 Jul 16 | T. Kristensen Thomas Kristensen | XXX | → | Brisbane RoarBRR | Free |
| 19 Jul 16 | S. Mauk Stefan Mauk | Adelaide UnitedADE | → |  NEC NijmegenNEC | Undisclosed |
| 19 Jul 16 | S. Mauk Stefan Mauk | Adelaide UnitedADE | → | NEC NijmegenNEC | Undisclosed |
| 18 Jul 16 | D. Vukovic Danny Vukovic | Melbourne VictoryMVC | → | Sydney FCSYD | Free |
| 18 Jul 16 | M. Birighitti Mark Birighitti | Newcastle JetsNEW | → |  Swansea CitySWA | Free |
| 18 Jul 16 | N. Kilkenny Neil Kilkenny |  Preston North EndPNE | → | Melbourne City FCMCY | Free |
| 18 Jul 16 | M. Birighitti Mark Birighitti | Newcastle JetsNEW | → | Swansea CitySWA | Free |
| 18 Jul 16 | N. Kilkenny Neil Kilkenny | Preston North EndPNE | → | Melbourne City FCMCY | Free |
| 18 Jul 16 | B. Ibini-Isei Bernie Ibini-Isei |  Club BruggeBRUG | → | Sydney FCSYD | Loan |
| 18 Jul 16 | A. Nabbout Andrew Nabbout | NSXNegeri SembilanNegeri Sembilan | → | Newcastle JetsNEW | Free |
| 17 Jul 16 | J. Kusukami Jumpei Kusukami |  Sagan TosuSAG | → | Western Sydney WanderersWSW | Undisclosed |
| 14 Jul 16 | K. Appiah-Kubi Kwabena Appiah-Kubi | Wellington Phoenix FCWEL | → |  Central Coast MarinersCCM | Free |
| 14 Jul 16 | B. Powell Blake Powell | Wellington Phoenix FCWEL | → | Central Coast MarinersCCM | Free |
| 13 Jul 16 | S. Smeltz Shane Smeltz | Sydney FCSYD | → | KXXKedahKED | Free |
| 12 Jul 16 | J. Brillante Josh Brillante |  FiorentinaFIO | → | Sydney FCSYD | Undisclosed |
| 12 Jul 16 | J. Brillante Josh Brillante | FiorentinaFIO | → | Sydney FCSYD | Undisclosed |
| 11 Jul 16 | A. Baró Alan Baró |  PonferradinaPON | → | Melbourne VictoryMVC | Undisclosed |
| 05 Jul 16 | H. Etxezarreta Borda |  AlavésALV | → | Western Sydney WanderersWSW | Undisclosed |
| 03 Jul 16 | Ivan Vujica | DZXDinamo ZagrebDinamo Zagreb | → | Newcastle JetsNEW | Undisclosed |
| 01 Jul 16 | R. Williams Rhys Williams |  MiddlesbroughMID | → |  Perth GloryPER | Free |
| 01 Jul 16 | L. Brattan Luke Brattan |  Manchester CityMNC | → | Melbourne City FCMCY | Loan |
| 01 Jul 16 | R. Williams Rhys Williams | MiddlesbroughMID | → | Perth GloryPER | Free |
| 01 Jul 16 | C. Herd Chris Herd |  ChesterfieldCHES | → | Perth GloryPER | Free |
| 01 Jul 16 | A. Mooy Aaron Mooy | Melbourne City FCMCY | → | Manchester CityMNC | Undisclosed |
| 01 Jul 16 | H. Novillo Harry Novillo | Melbourne City FCMCY | → | MXXManisasporManisaspor | 500000 |
| 01 Jul 16 | T. Deng Thomas Deng | Melbourne VictoryMVC | → |  PSV EindhovenPSV | Loan |
| 01 Jul 16 | A. Mooy Aaron Mooy | Melbourne City FCMCY | → | Manchester CityMNC | Undisclosed |
| 01 Jul 16 | L. Brattan Luke Brattan | Manchester CityMNC | → | Melbourne City FCMCY | Loan |
| 01 Jul 16 | T. Deng Thomas Deng | Melbourne VictoryMVC | → | PSV EindhovenPSV | Loan |
| 12 Jun 16 | J. Donachie James Donachie | Brisbane RoarBRR | → | Melbourne VictoryMVC | Free |
| 23 May 16 | S. Lustica Steven Lustica | Brisbane RoarBRR | → | Western Sydney WanderersWSW | Free |
| 06 May 16 | B. Kamau Bruce Kamau | Adelaide UnitedADE | → | Melbourne City FCMCY | Free |
| 03 May 16 | C. Herd Chris Herd | ChesterfieldCHES | → | Perth GloryPER | Free |
| 28 Apr 16 | D. Clut Devante Clut | Brisbane RoarBRR | → | Newcastle JetsNEW | Free |
| 05 Feb 16 | A. Wilkinson Alex Wilkinson | JMXJeonbuk MotorsJeonbuk Motors | → | Melbourne City FCMCY | Free |
| 03 Feb 16 | S. van Dijk Sergio van Dijk |  SuphanburiSUP | → | Adelaide UnitedADE | Free |
| 03 Feb 16 | D. Carney David Carney | Newcastle JetsNEW | → | Sydney FCSYD | Free |
| 27 Jan 16 | S. Lowry Shane Lowry |  Birmingham CityBIR | → | Perth GloryPER | Free |
| 27 Jan 16 | S. Lowry Shane Lowry | Birmingham CityBIR | → | Perth GloryPER | Free |
| 19 Jan 16 | A. Cáceres Anthony Cáceres | Manchester CityMNC | → | Melbourne City FCMCY | Loan |
| 19 Jan 16 | A. Cáceres Anthony Cáceres | Manchester CityMNC | → | Melbourne City FCMCY | Loan |
| 16 Jan 16 | Luis Garcia | XXX | → | Central Coast MarinersCCM | Free |
| 15 Jan 16 | A. Cáceres Anthony Cáceres | Central Coast MarinersCCM | → | Manchester CityMNC | Undisclosed |
| 15 Jan 16 | A. Cáceres Anthony Cáceres | Central Coast MarinersCCM | → | Manchester CityMNC | Undisclosed |